borg/borg/repository.py

from configparser import ConfigParser
from binascii import hexlify
from itertools import islice
import errno
import logging
logger = logging.getLogger(__name__)

import os
import shutil
import struct
from zlib import crc32

import msgpack
from .helpers import Error, ErrorWithTraceback, IntegrityError, unhexlify, ProgressIndicatorPercent
from .hashindex import NSIndex
from .locking import UpgradableLock, LockError, LockErrorT
from .lrucache import LRUCache

MAX_OBJECT_SIZE = 20 * 1024 * 1024
MAGIC = b'BORG_SEG'
MAGIC_LEN = len(MAGIC)
TAG_PUT = 0
TAG_DELETE = 1
TAG_COMMIT = 2


class Repository:
    """Filesystem based transactional key value store

    On disk layout:
    dir/README
    dir/config
    dir/data/<X / SEGMENTS_PER_DIR>/<X>
    dir/index.X
    dir/hints.X
    """
    DEFAULT_MAX_SEGMENT_SIZE = 5 * 1024 * 1024
    DEFAULT_SEGMENTS_PER_DIR = 10000

    class DoesNotExist(Error):
        """Repository {} does not exist."""

    class AlreadyExists(Error):
        """Repository {} already exists."""

    class InvalidRepository(Error):
        """{} is not a valid repository. Check repo config."""

    class CheckNeeded(ErrorWithTraceback):
        """Inconsistency detected. Please run "borg check {}"."""

    class ObjectNotFound(ErrorWithTraceback):
        """Object with key {} not found in repository {}."""

    def __init__(self, path, create=False, exclusive=False, lock_wait=None, lock=True):
        self.path = os.path.abspath(path)
        self.io = None
        self.lock = None
        self.index = None
        self._active_txn = False
        if create:
            self.create(self.path)
        self.open(self.path, exclusive, lock_wait=lock_wait, lock=lock)

    def __del__(self):
        self.close()

    def __repr__(self):
        return '<%s %s>' % (self.__class__.__name__, self.path)

    def create(self, path):
        """Create a new empty repository at `path`
        """
        if os.path.exists(path) and (not os.path.isdir(path) or os.listdir(path)):
            raise self.AlreadyExists(path)
        if not os.path.exists(path):
            os.mkdir(path)
        with open(os.path.join(path, 'README'), 'w') as fd:
            fd.write('This is a Borg repository\n')
        os.mkdir(os.path.join(path, 'data'))
        config = ConfigParser(interpolation=None)
        config.add_section('repository')
        config.set('repository', 'version', '1')
        config.set('repository', 'segments_per_dir', str(self.DEFAULT_SEGMENTS_PER_DIR))
        config.set('repository', 'max_segment_size', str(self.DEFAULT_MAX_SEGMENT_SIZE))
        config.set('repository', 'id', hexlify(os.urandom(32)).decode('ascii'))
        self.save_config(path, config)

    def save_config(self, path, config):
        config_path = os.path.join(path, 'config')
        with open(config_path, 'w') as fd:
            config.write(fd)

    def save_key(self, keydata):
        assert self.config
        keydata = keydata.decode('utf-8')  # remote repo: msgpack issue #99, getting bytes
        self.config.set('repository', 'key', keydata)
        self.save_config(self.path, self.config)

    def load_key(self):
        keydata = self.config.get('repository', 'key')
        return keydata.encode('utf-8')  # remote repo: msgpack issue #99, returning bytes

    def destroy(self):
        """Destroy the repository at `self.path`
        """
        self.close()
        os.remove(os.path.join(self.path, 'config'))  # kill config first
        shutil.rmtree(self.path)

    def get_index_transaction_id(self):
        indices = sorted((int(name[6:]) for name in os.listdir(self.path) if name.startswith('index.') and name[6:].isdigit()))
        if indices:
            return indices[-1]
        else:
            return None

    def get_transaction_id(self):
        index_transaction_id = self.get_index_transaction_id()
        segments_transaction_id = self.io.get_segments_transaction_id()
        if index_transaction_id is not None and segments_transaction_id is None:
            raise self.CheckNeeded(self.path)
        # Attempt to automatically rebuild index if we crashed between commit
        # tag write and index save
        if index_transaction_id != segments_transaction_id:
            if index_transaction_id is not None and index_transaction_id > segments_transaction_id:
                replay_from = None
            else:
                replay_from = index_transaction_id
            self.replay_segments(replay_from, segments_transaction_id)
        return self.get_index_transaction_id()

    def break_lock(self):
        UpgradableLock(os.path.join(self.path, 'lock')).break_lock()

    def open(self, path, exclusive, lock_wait=None, lock=True):
        self.path = path
        if not os.path.isdir(path):
            raise self.DoesNotExist(path)
        if lock:
            self.lock = UpgradableLock(os.path.join(path, 'lock'), exclusive, timeout=lock_wait).acquire()
        else:
            self.lock = None
        self.config = ConfigParser(interpolation=None)
        self.config.read(os.path.join(self.path, 'config'))
        if 'repository' not in self.config.sections() or self.config.getint('repository', 'version') != 1:
            raise self.InvalidRepository(path)
        self.max_segment_size = self.config.getint('repository', 'max_segment_size')
        self.segments_per_dir = self.config.getint('repository', 'segments_per_dir')
        self.id = unhexlify(self.config.get('repository', 'id').strip())
        self.io = LoggedIO(self.path, self.max_segment_size, self.segments_per_dir)

    def close(self):
        if self.lock:
            if self.io:
                self.io.close()
            self.io = None
            self.lock.release()
            self.lock = None

    def commit(self, save_space=False):
        """Commit transaction
        """
        self.io.write_commit()
        self.compact_segments(save_space=save_space)
        self.write_index()
        self.rollback()

    def open_index(self, transaction_id):
        if transaction_id is None:
            return NSIndex()
        return NSIndex.read((os.path.join(self.path, 'index.%d') % transaction_id).encode('utf-8'))

    def prepare_txn(self, transaction_id, do_cleanup=True):
        self._active_txn = True
        try:
            self.lock.upgrade()
        except (LockError, LockErrorT):
            # if upgrading the lock to exclusive fails, we do not have an
            # active transaction. this is important for "serve" mode, where
            # the repository instance lives on - even if exceptions happened.
            self._active_txn = False
            raise
        if not self.index or transaction_id is None:
            self.index = self.open_index(transaction_id)
        if transaction_id is None:
            self.segments = {}  # XXX bad name: usage_count_of_segment_x = self.segments[x]
            self.compact = set()  # XXX bad name: segments_needing_compaction = self.compact
        else:
            if do_cleanup:
                self.io.cleanup(transaction_id)
            with open(os.path.join(self.path, 'hints.%d' % transaction_id), 'rb') as fd:
                hints = msgpack.unpack(fd)
            if hints[b'version'] != 1:
                raise ValueError('Unknown hints file version: %d' % hints['version'])
            self.segments = hints[b'segments']
            self.compact = set(hints[b'compact'])

    def write_index(self):
        hints = {b'version': 1,
                 b'segments': self.segments,
                 b'compact': list(self.compact)}
        transaction_id = self.io.get_segments_transaction_id()
        hints_file = os.path.join(self.path, 'hints.%d' % transaction_id)
        with open(hints_file + '.tmp', 'wb') as fd:
            msgpack.pack(hints, fd)
            fd.flush()
            os.fsync(fd.fileno())
        os.rename(hints_file + '.tmp', hints_file)
        self.index.write(os.path.join(self.path, 'index.tmp'))
        os.rename(os.path.join(self.path, 'index.tmp'),
                  os.path.join(self.path, 'index.%d' % transaction_id))
        # Remove old indices
        current = '.%d' % transaction_id
        for name in os.listdir(self.path):
            if not name.startswith('index.') and not name.startswith('hints.'):
                continue
            if name.endswith(current):
                continue
            os.unlink(os.path.join(self.path, name))
        self.index = None

    def compact_segments(self, save_space=False):
        """Compact sparse segments by copying data into new segments
        """
        if not self.compact:
            return
        index_transaction_id = self.get_index_transaction_id()
        segments = self.segments
        unused = []  # list of segments, that are not used anymore

        def complete_xfer():
            # complete the transfer (usually exactly when some target segment
            # is full, or at the very end when everything is processed)
            nonlocal unused
            # commit the new, compact, used segments
            self.io.write_commit()
            # get rid of the old, sparse, unused segments. free space.
            for segment in unused:
                assert self.segments.pop(segment) == 0
                self.io.delete_segment(segment)
            unused = []

        for segment in sorted(self.compact):
            if self.io.segment_exists(segment):
                for tag, key, offset, data in self.io.iter_objects(segment, include_data=True):
                    if tag == TAG_PUT and self.index.get(key, (-1, -1)) == (segment, offset):
                        try:
                            new_segment, offset = self.io.write_put(key, data, raise_full=save_space)
                        except LoggedIO.SegmentFull:
                            complete_xfer()
                            new_segment, offset = self.io.write_put(key, data)
                        self.index[key] = new_segment, offset
                        segments.setdefault(new_segment, 0)
                        segments[new_segment] += 1
                        segments[segment] -= 1
                    elif tag == TAG_DELETE:
                        if index_transaction_id is None or segment > index_transaction_id:
                            try:
                                self.io.write_delete(key, raise_full=save_space)
                            except LoggedIO.SegmentFull:
                                complete_xfer()
                                self.io.write_delete(key)
                assert segments[segment] == 0
                unused.append(segment)
        complete_xfer()
        self.compact = set()

    def replay_segments(self, index_transaction_id, segments_transaction_id):
        self.prepare_txn(index_transaction_id, do_cleanup=False)
        try:
            segment_count = sum(1 for _ in self.io.segment_iterator())
            pi = ProgressIndicatorPercent(total=segment_count, msg="Replaying segments %3.0f%%", same_line=True)
            for i, (segment, filename) in enumerate(self.io.segment_iterator()):
                pi.show(i)
                if index_transaction_id is not None and segment <= index_transaction_id:
                    continue
                if segment > segments_transaction_id:
                    break
                objects = self.io.iter_objects(segment)
                self._update_index(segment, objects)
            pi.finish()
            self.write_index()
        finally:
            self.rollback()

    def _update_index(self, segment, objects, report=None):
        """some code shared between replay_segments and check"""
        self.segments[segment] = 0
        for tag, key, offset in objects:
            if tag == TAG_PUT:
                try:
                    s, _ = self.index[key]
                    self.compact.add(s)
                    self.segments[s] -= 1
                except KeyError:
                    pass
                self.index[key] = segment, offset
                self.segments[segment] += 1
            elif tag == TAG_DELETE:
                try:
                    s, _ = self.index.pop(key)
                    self.segments[s] -= 1
                    self.compact.add(s)
                except KeyError:
                    pass
                self.compact.add(segment)
            elif tag == TAG_COMMIT:
                continue
            else:
                msg = 'Unexpected tag {} in segment {}'.format(tag, segment)
                if report is None:
                    raise self.CheckNeeded(msg)
                else:
                    report(msg)
        if self.segments[segment] == 0:
            self.compact.add(segment)

    def check(self, repair=False, save_space=False):
        """Check repository consistency

        This method verifies all segment checksums and makes sure
        the index is consistent with the data stored in the segments.
        """
        error_found = False

        def report_error(msg):
            nonlocal error_found
            error_found = True
            logger.error(msg)

        logger.info('Starting repository check')
        assert not self._active_txn
        try:
            transaction_id = self.get_transaction_id()
            current_index = self.open_index(transaction_id)
        except Exception:
            transaction_id = self.io.get_segments_transaction_id()
            current_index = None
        if transaction_id is None:
            transaction_id = self.get_index_transaction_id()
        if transaction_id is None:
            transaction_id = self.io.get_latest_segment()
        if repair:
            self.io.cleanup(transaction_id)
        segments_transaction_id = self.io.get_segments_transaction_id()
        self.prepare_txn(None)  # self.index, self.compact, self.segments all empty now!
        segment_count = sum(1 for _ in self.io.segment_iterator())
        pi = ProgressIndicatorPercent(total=segment_count, msg="Checking segments %3.0f%%", same_line=True)
        for i, (segment, filename) in enumerate(self.io.segment_iterator()):
            pi.show(i)
            if segment > transaction_id:
                continue
            try:
                objects = list(self.io.iter_objects(segment))
            except IntegrityError as err:
                report_error(str(err))
                objects = []
                if repair:
                    self.io.recover_segment(segment, filename)
                    objects = list(self.io.iter_objects(segment))
            self._update_index(segment, objects, report_error)
        pi.finish()
        # self.index, self.segments, self.compact now reflect the state of the segment files up to <transaction_id>
        # We might need to add a commit tag if no committed segment is found
        if repair and segments_transaction_id is None:
            report_error('Adding commit tag to segment {}'.format(transaction_id))
            self.io.segment = transaction_id + 1
            self.io.write_commit()
        if current_index and not repair:
            # current_index = "as found on disk"
            # self.index = "as rebuilt in-memory from segments"
            if len(current_index) != len(self.index):
                report_error('Index object count mismatch. {} != {}'.format(len(current_index), len(self.index)))
            elif current_index:
                for key, value in self.index.iteritems():
                    if current_index.get(key, (-1, -1)) != value:
                        report_error('Index mismatch for key {}. {} != {}'.format(key, value, current_index.get(key, (-1, -1))))
        if repair:
            self.compact_segments(save_space=save_space)
            self.write_index()
        self.rollback()
        if error_found:
            if repair:
                logger.info('Completed repository check, errors found and repaired.')
            else:
                logger.error('Completed repository check, errors found.')
        else:
            logger.info('Completed repository check, no problems found.')
        return not error_found or repair

    def rollback(self):
        """
        """
        self.index = None
        self._active_txn = False

    def __len__(self):
        if not self.index:
            self.index = self.open_index(self.get_transaction_id())
        return len(self.index)

    def __contains__(self, id):
        if not self.index:
            self.index = self.open_index(self.get_transaction_id())
        return id in self.index

    def list(self, limit=None, marker=None):
        if not self.index:
            self.index = self.open_index(self.get_transaction_id())
        return [id_ for id_, _ in islice(self.index.iteritems(marker=marker), limit)]

    def get(self, id_):
        if not self.index:
            self.index = self.open_index(self.get_transaction_id())
        try:
            segment, offset = self.index[id_]
            return self.io.read(segment, offset, id_)
        except KeyError:
            raise self.ObjectNotFound(id_, self.path)

    def get_many(self, ids, is_preloaded=False):
        for id_ in ids:
            yield self.get(id_)

    def put(self, id, data, wait=True):
        if not self._active_txn:
            self.prepare_txn(self.get_transaction_id())
        try:
            segment, _ = self.index[id]
            self.segments[segment] -= 1
            self.compact.add(segment)
            segment = self.io.write_delete(id)
            self.segments.setdefault(segment, 0)
            self.compact.add(segment)
        except KeyError:
            pass
        segment, offset = self.io.write_put(id, data)
        self.segments.setdefault(segment, 0)
        self.segments[segment] += 1
        self.index[id] = segment, offset

    def delete(self, id, wait=True):
        if not self._active_txn:
            self.prepare_txn(self.get_transaction_id())
        try:
            segment, offset = self.index.pop(id)
        except KeyError:
            raise self.ObjectNotFound(id, self.path)
        self.segments[segment] -= 1
        self.compact.add(segment)
        segment = self.io.write_delete(id)
        self.compact.add(segment)
        self.segments.setdefault(segment, 0)

    def preload(self, ids):
        """Preload objects (only applies to remote repositories)
        """


class LoggedIO:

    class SegmentFull(Exception):
        """raised when a segment is full, before opening next"""

    header_fmt = struct.Struct('<IIB')
    assert header_fmt.size == 9
    put_header_fmt = struct.Struct('<IIB32s')
    assert put_header_fmt.size == 41
    header_no_crc_fmt = struct.Struct('<IB')
    assert header_no_crc_fmt.size == 5
    crc_fmt = struct.Struct('<I')
    assert crc_fmt.size == 4

    _commit = header_no_crc_fmt.pack(9, TAG_COMMIT)
    COMMIT = crc_fmt.pack(crc32(_commit)) + _commit

    def __init__(self, path, limit, segments_per_dir, capacity=90):
        self.path = path
        self.fds = LRUCache(capacity,
                            dispose=lambda fd: fd.close())
        self.segment = 0
        self.limit = limit
        self.segments_per_dir = segments_per_dir
        self.offset = 0
        self._write_fd = None

    def close(self):
        self.close_segment()
        self.fds.clear()
        self.fds = None  # Just to make sure we're disabled

    def segment_iterator(self, reverse=False):
        data_path = os.path.join(self.path, 'data')
        dirs = sorted((dir for dir in os.listdir(data_path) if dir.isdigit()), key=int, reverse=reverse)
        for dir in dirs:
            filenames = os.listdir(os.path.join(data_path, dir))
            sorted_filenames = sorted((filename for filename in filenames
                                       if filename.isdigit()), key=int, reverse=reverse)
            for filename in sorted_filenames:
                yield int(filename), os.path.join(data_path, dir, filename)

    def get_latest_segment(self):
        for segment, filename in self.segment_iterator(reverse=True):
            return segment
        return None

    def get_segments_transaction_id(self):
        """Verify that the transaction id is consistent with the index transaction id
        """
        for segment, filename in self.segment_iterator(reverse=True):
            if self.is_committed_segment(filename):
                return segment
        return None

    def cleanup(self, transaction_id):
        """Delete segment files left by aborted transactions
        """
        self.segment = transaction_id + 1
        for segment, filename in self.segment_iterator(reverse=True):
            if segment > transaction_id:
                os.unlink(filename)
            else:
                break

    def is_committed_segment(self, filename):
        """Check if segment ends with a COMMIT_TAG tag
        """
        with open(filename, 'rb') as fd:
            try:
                fd.seek(-self.header_fmt.size, os.SEEK_END)
            except OSError as e:
                # return False if segment file is empty or too small
                if e.errno == errno.EINVAL:
                    return False
                raise e
            return fd.read(self.header_fmt.size) == self.COMMIT

    def segment_filename(self, segment):
        return os.path.join(self.path, 'data', str(segment // self.segments_per_dir), str(segment))

    def get_write_fd(self, no_new=False, raise_full=False):
        if not no_new and self.offset and self.offset > self.limit:
            if raise_full:
                raise self.SegmentFull
            self.close_segment()
        if not self._write_fd:
            if self.segment % self.segments_per_dir == 0:
                dirname = os.path.join(self.path, 'data', str(self.segment // self.segments_per_dir))
                if not os.path.exists(dirname):
                    os.mkdir(dirname)
            self._write_fd = open(self.segment_filename(self.segment), 'ab')
            self._write_fd.write(MAGIC)
            self.offset = MAGIC_LEN
        return self._write_fd

    def get_fd(self, segment):
        try:
            return self.fds[segment]
        except KeyError:
            fd = open(self.segment_filename(segment), 'rb')
            self.fds[segment] = fd
            return fd

    def delete_segment(self, segment):
        if segment in self.fds:
            del self.fds[segment]
        try:
            os.unlink(self.segment_filename(segment))
        except OSError:
            pass

    def segment_exists(self, segment):
        return os.path.exists(self.segment_filename(segment))

    def iter_objects(self, segment, include_data=False):
        fd = self.get_fd(segment)
        fd.seek(0)
        if fd.read(MAGIC_LEN) != MAGIC:
            raise IntegrityError('Invalid segment magic [segment {}, offset {}]'.format(segment, 0))
        offset = MAGIC_LEN
        header = fd.read(self.header_fmt.size)
        while header:
            size, tag, key, data = self._read(fd, self.header_fmt, header, segment, offset,
                                              (TAG_PUT, TAG_DELETE, TAG_COMMIT))
            if include_data:
                yield tag, key, offset, data
            else:
                yield tag, key, offset
            offset += size
            header = fd.read(self.header_fmt.size)

    def recover_segment(self, segment, filename):
        if segment in self.fds:
            del self.fds[segment]
        with open(filename, 'rb') as fd:
            data = memoryview(fd.read())
        os.rename(filename, filename + '.beforerecover')
        logger.info('attempting to recover ' + filename)
        with open(filename, 'wb') as fd:
            fd.write(MAGIC)
            while len(data) >= self.header_fmt.size:
                crc, size, tag = self.header_fmt.unpack(data[:self.header_fmt.size])
                if size < self.header_fmt.size or size > len(data):
                    data = data[1:]
                    continue
                if crc32(data[4:size]) & 0xffffffff != crc:
                    data = data[1:]
                    continue
                fd.write(data[:size])
                data = data[size:]

    def read(self, segment, offset, id):
        if segment == self.segment and self._write_fd:
            self._write_fd.flush()
        fd = self.get_fd(segment)
        fd.seek(offset)
        header = fd.read(self.put_header_fmt.size)
        size, tag, key, data = self._read(fd, self.put_header_fmt, header, segment, offset, (TAG_PUT, ))
        if id != key:
            raise IntegrityError('Invalid segment entry header, is not for wanted id [segment {}, offset {}]'.format(
                segment, offset))
        return data

    def _read(self, fd, fmt, header, segment, offset, acceptable_tags):
        # some code shared by read() and iter_objects()
        try:
            hdr_tuple = fmt.unpack(header)
        except struct.error as err:
            raise IntegrityError('Invalid segment entry header [segment {}, offset {}]: {}'.format(
                segment, offset, err))
        if fmt is self.put_header_fmt:
            crc, size, tag, key = hdr_tuple
        elif fmt is self.header_fmt:
            crc, size, tag = hdr_tuple
            key = None
        else:
            raise TypeError("_read called with unsupported format")
        if size > MAX_OBJECT_SIZE or size < fmt.size:
            raise IntegrityError('Invalid segment entry size [segment {}, offset {}]'.format(
                segment, offset))
        length = size - fmt.size
        data = fd.read(length)
        if len(data) != length:
            raise IntegrityError('Segment entry data short read [segment {}, offset {}]: expected {}, got {} bytes'.format(
                segment, offset, length, len(data)))
        if crc32(data, crc32(memoryview(header)[4:])) & 0xffffffff != crc:
            raise IntegrityError('Segment entry checksum mismatch [segment {}, offset {}]'.format(
                segment, offset))
        if tag not in acceptable_tags:
            raise IntegrityError('Invalid segment entry header, did not get acceptable tag [segment {}, offset {}]'.format(
                segment, offset))
        if key is None and tag in (TAG_PUT, TAG_DELETE):
            key, data = data[:32], data[32:]
        return size, tag, key, data

    def write_put(self, id, data, raise_full=False):
        fd = self.get_write_fd(raise_full=raise_full)
        size = len(data) + self.put_header_fmt.size
        offset = self.offset
        header = self.header_no_crc_fmt.pack(size, TAG_PUT)
        crc = self.crc_fmt.pack(crc32(data, crc32(id, crc32(header))) & 0xffffffff)
        fd.write(b''.join((crc, header, id, data)))
        self.offset += size
        return self.segment, offset

    def write_delete(self, id, raise_full=False):
        fd = self.get_write_fd(raise_full=raise_full)
        header = self.header_no_crc_fmt.pack(self.put_header_fmt.size, TAG_DELETE)
        crc = self.crc_fmt.pack(crc32(id, crc32(header)) & 0xffffffff)
        fd.write(b''.join((crc, header, id)))
        self.offset += self.put_header_fmt.size
        return self.segment

    def write_commit(self):
        fd = self.get_write_fd(no_new=True)
        header = self.header_no_crc_fmt.pack(self.header_fmt.size, TAG_COMMIT)
        crc = self.crc_fmt.pack(crc32(header) & 0xffffffff)
        fd.write(b''.join((crc, header)))
        self.close_segment()

    def close_segment(self):
        if self._write_fd:
            self.segment += 1
            self.offset = 0
            self._write_fd.flush()
            os.fsync(self._write_fd.fileno())
            if hasattr(os, 'posix_fadvise'):  # python >= 3.3, only on UNIX
                # tell the OS that it does not need to cache what we just wrote,
                # avoids spoiling the cache for the OS and other processes.
                os.posix_fadvise(self._write_fd.fileno(), 0, 0, os.POSIX_FADV_DONTNEED)
            self._write_fd.close()
            self._write_fd = None