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@@ -2,14 +2,9 @@
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API_VERSION = '1.2_01'
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-import cython
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import os
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import errno
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import time
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-from cpython.bytes cimport PyBytes_AsString
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-from libc.stdint cimport uint8_t, uint32_t
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-from libc.stdlib cimport malloc, free
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-from libc.string cimport memcpy, memmove
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from ..constants import CH_DATA, CH_ALLOC, CH_HOLE, zeros
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from .reader import FileReader, Chunk
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@@ -124,323 +119,3 @@ class ChunkerFixed:
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break # EOF
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assert size <= self.block_size
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yield chunk
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-
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-
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-# Cyclic polynomial / buzhash
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-#
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-# https://en.wikipedia.org/wiki/Rolling_hash
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-#
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-# http://www.serve.net/buz/Notes.1st.year/HTML/C6/rand.012.html (by "BUZ", the inventor)
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-#
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-# http://www.dcs.gla.ac.uk/~hamer/cakes-talk.pdf (see buzhash slide)
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-#
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-# Some properties of buzhash / of this implementation:
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-#
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-# (1) the hash is designed for inputs <= 32 bytes, but the chunker uses it on a 4095 byte window;
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-# any repeating bytes at distance 32 within those 4095 bytes can cause cancellation within
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-# the hash function, e.g. in "X <any 31 bytes> X", the last X would cancel out the influence
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-# of the first X on the hash value.
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-#
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-# (2) the hash table is supposed to have (according to the BUZ) exactly a 50% distribution of
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-# 0/1 bit values per position, but the hard coded table below doesn't fit that property.
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-#
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-# (3) if you would use a window size divisible by 64, the seed would cancel itself out completely.
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-# this is why we use a window size of 4095 bytes.
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-#
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-# Another quirk is that, even with the 4095 byte window, XORing the entire table by a constant
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-# is equivalent to XORing the hash output with a different constant. but since the seed is stored
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-# encrypted, i think it still serves its purpose.
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-
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-cdef uint32_t table_base[256]
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-table_base = [
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- 0xe7f831ec, 0xf4026465, 0xafb50cae, 0x6d553c7a, 0xd639efe3, 0x19a7b895, 0x9aba5b21, 0x5417d6d4,
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- 0x35fd2b84, 0xd1f6a159, 0x3f8e323f, 0xb419551c, 0xf444cebf, 0x21dc3b80, 0xde8d1e36, 0x84a32436,
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- 0xbeb35a9d, 0xa36f24aa, 0xa4e60186, 0x98d18ffe, 0x3f042f9e, 0xdb228bcd, 0x096474b7, 0x5c20c2f7,
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- 0xf9eec872, 0xe8625275, 0xb9d38f80, 0xd48eb716, 0x22a950b4, 0x3cbaaeaa, 0xc37cddd3, 0x8fea6f6a,
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- 0x1d55d526, 0x7fd6d3b3, 0xdaa072ee, 0x4345ac40, 0xa077c642, 0x8f2bd45b, 0x28509110, 0x55557613,
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- 0xffc17311, 0xd961ffef, 0xe532c287, 0xaab95937, 0x46d38365, 0xb065c703, 0xf2d91d0f, 0x92cd4bb0,
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- 0x4007c712, 0xf35509dd, 0x505b2f69, 0x557ead81, 0x310f4563, 0xbddc5be8, 0x9760f38c, 0x701e0205,
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- 0x00157244, 0x14912826, 0xdc4ca32b, 0x67b196de, 0x5db292e8, 0x8c1b406b, 0x01f34075, 0xfa2520f7,
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- 0x73bc37ab, 0x1e18bc30, 0xfe2c6cb3, 0x20c522d0, 0x5639e3db, 0x942bda35, 0x899af9d1, 0xced44035,
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- 0x98cc025b, 0x255f5771, 0x70fefa24, 0xe928fa4d, 0x2c030405, 0xb9325590, 0x20cb63bd, 0xa166305d,
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- 0x80e52c0a, 0xa8fafe2f, 0x1ad13f7d, 0xcfaf3685, 0x6c83a199, 0x7d26718a, 0xde5dfcd9, 0x79cf7355,
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- 0x8979d7fb, 0xebf8c55e, 0xebe408e4, 0xcd2affba, 0xe483be6e, 0xe239d6de, 0x5dc1e9e0, 0x0473931f,
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- 0x851b097c, 0xac5db249, 0x09c0f9f2, 0xd8d2f134, 0xe6f38e41, 0xb1c71bf1, 0x52b6e4db, 0x07224424,
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- 0x6cf73e85, 0x4f25d89c, 0x782a7d74, 0x10a68dcd, 0x3a868189, 0xd570d2dc, 0x69630745, 0x9542ed86,
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- 0x331cd6b2, 0xa84b5b28, 0x07879c9d, 0x38372f64, 0x7185db11, 0x25ba7c83, 0x01061523, 0xe6792f9f,
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- 0xe5df07d1, 0x4321b47f, 0x7d2469d8, 0x1a3a4f90, 0x48be29a3, 0x669071af, 0x8ec8dd31, 0x0810bfbf,
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- 0x813a06b4, 0x68538345, 0x65865ddc, 0x43a71b8e, 0x78619a56, 0x5a34451d, 0x5bdaa3ed, 0x71edc7e9,
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- 0x17ac9a20, 0x78d10bfa, 0x6c1e7f35, 0xd51839d9, 0x240cbc51, 0x33513cc1, 0xd2b4f795, 0xccaa8186,
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- 0x0babe682, 0xa33cf164, 0x18c643ea, 0xc1ca105f, 0x9959147a, 0x6d3d94de, 0x0b654fbe, 0xed902ca0,
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- 0x7d835cb5, 0x99ba1509, 0x6445c922, 0x495e76c2, 0xf07194bc, 0xa1631d7e, 0x677076a5, 0x89fffe35,
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- 0x1a49bcf3, 0x8e6c948a, 0x0144c917, 0x8d93aea1, 0x16f87ddf, 0xc8f25d49, 0x1fb11297, 0x27e750cd,
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- 0x2f422da1, 0xdee89a77, 0x1534c643, 0x457b7b8b, 0xaf172f7a, 0x6b9b09d6, 0x33573f7f, 0xf14e15c4,
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- 0x526467d5, 0xaf488241, 0x87c3ee0d, 0x33be490c, 0x95aa6e52, 0x43ec242e, 0xd77de99b, 0xd018334f,
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- 0x5b78d407, 0x498eb66b, 0xb1279fa8, 0xb38b0ea6, 0x90718376, 0xe325dee2, 0x8e2f2cba, 0xcaa5bdec,
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- 0x9d652c56, 0xad68f5cb, 0xa77591af, 0x88e37ee8, 0xf8faa221, 0xfcbbbe47, 0x4f407786, 0xaf393889,
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- 0xf444a1d9, 0x15ae1a2f, 0x40aa7097, 0x6f9486ac, 0x29d232a3, 0xe47609e9, 0xe8b631ff, 0xba8565f4,
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- 0x11288749, 0x46c9a838, 0xeb1b7cd8, 0xf516bbb1, 0xfb74fda0, 0x010996e6, 0x4c994653, 0x1d889512,
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- 0x53dcd9a3, 0xdd074697, 0x1e78e17c, 0x637c98bf, 0x930bb219, 0xcf7f75b0, 0xcb9355fb, 0x9e623009,
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- 0xe466d82c, 0x28f968d3, 0xfeb385d9, 0x238e026c, 0xb8ed0560, 0x0c6a027a, 0x3d6fec4b, 0xbb4b2ec2,
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- 0xe715031c, 0xeded011d, 0xcdc4d3b9, 0xc456fc96, 0xdd0eea20, 0xb3df8ec9, 0x12351993, 0xd9cbb01c,
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- 0x603147a2, 0xcf37d17d, 0xf7fcd9dc, 0xd8556fa3, 0x104c8131, 0x13152774, 0xb4715811, 0x6a72c2c9,
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- 0xc5ae37bb, 0xa76ce12a, 0x8150d8f3, 0x2ec29218, 0xa35f0984, 0x48c0647e, 0x0b5ff98c, 0x71893f7b
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-]
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-
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-# This seems to be the most reliable way to inline this code, using a C preprocessor macro:
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-cdef extern from *:
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- """
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- #define BARREL_SHIFT(v, shift) (((v) << (shift)) | ((v) >> (((32 - (shift)) & 0x1f))))
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- """
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- uint32_t BARREL_SHIFT(uint32_t v, uint32_t shift)
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-
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-
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-@cython.boundscheck(False) # Deactivate bounds checking
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-@cython.wraparound(False) # Deactivate negative indexing.
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-cdef uint32_t* buzhash_init_table(uint32_t seed):
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- """Initialize the buzhash table with the given seed."""
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- cdef int i
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- cdef uint32_t* table = <uint32_t*>malloc(1024) # 256 * sizeof(uint32_t)
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- for i in range(256):
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- table[i] = table_base[i] ^ seed
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- return table
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-
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-
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-@cython.boundscheck(False) # Deactivate bounds checking
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-@cython.wraparound(False) # Deactivate negative indexing.
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-@cython.cdivision(True) # Use C division/modulo semantics for integer division.
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-cdef uint32_t _buzhash(const unsigned char* data, size_t len, const uint32_t* h):
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- """Calculate the buzhash of the given data."""
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- cdef uint32_t i
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- cdef uint32_t sum = 0, imod
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- for i in range(len - 1, 0, -1):
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- imod = i & 0x1f
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- sum ^= BARREL_SHIFT(h[data[0]], imod)
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- data += 1
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- return sum ^ h[data[0]]
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-
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-
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-@cython.boundscheck(False) # Deactivate bounds checking
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-@cython.wraparound(False) # Deactivate negative indexing.
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-@cython.cdivision(True) # Use C division/modulo semantics for integer division.
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-cdef uint32_t _buzhash_update(uint32_t sum, unsigned char remove, unsigned char add, size_t len, const uint32_t* h):
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- """Update the buzhash with a new byte."""
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- cdef uint32_t lenmod = len & 0x1f
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- return BARREL_SHIFT(sum, 1) ^ BARREL_SHIFT(h[remove], lenmod) ^ h[add]
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-
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-
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-cdef class Chunker:
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- """
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- Content-Defined Chunker, variable chunk sizes.
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-
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- This chunker makes quite some effort to cut mostly chunks of the same-content, even if
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- the content moves to a different offset inside the file. It uses the buzhash
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- rolling-hash algorithm to identify the chunk cutting places by looking at the
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- content inside the moving window and computing the rolling hash value over the
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- window contents. If the last n bits of the rolling hash are 0, a chunk is cut.
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- Additionally it obeys some more criteria, like a minimum and maximum chunk size.
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- It also uses a per-repo random seed to avoid some chunk length fingerprinting attacks.
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- """
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- cdef uint32_t chunk_mask
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- cdef uint32_t* table
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- cdef uint8_t* data
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- cdef object _fd # Python object for file descriptor
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- cdef int fh
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- cdef int done, eof
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- cdef size_t min_size, buf_size, window_size, remaining, position, last
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- cdef long long bytes_read, bytes_yielded # off_t in C, using long long for compatibility
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- cdef readonly float chunking_time
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- cdef object file_reader # FileReader instance
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- cdef size_t reader_block_size
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- cdef bint sparse
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-
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- def __cinit__(self, int seed, int chunk_min_exp, int chunk_max_exp, int hash_mask_bits, int hash_window_size, bint sparse=False):
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- min_size = 1 << chunk_min_exp
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- max_size = 1 << chunk_max_exp
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- assert max_size <= len(zeros)
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- # see chunker_process, first while loop condition, first term must be able to get True:
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- assert hash_window_size + min_size + 1 <= max_size, "too small max_size"
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-
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- self.window_size = hash_window_size
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- self.chunk_mask = (1 << hash_mask_bits) - 1
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- self.min_size = min_size
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- self.table = buzhash_init_table(seed & 0xffffffff)
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- self.buf_size = max_size
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- self.data = <uint8_t*>malloc(self.buf_size)
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- self.fh = -1
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- self.done = 0
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- self.eof = 0
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- self.remaining = 0
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- self.position = 0
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- self.last = 0
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- self.bytes_read = 0
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- self.bytes_yielded = 0
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- self._fd = None
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- self.chunking_time = 0.0
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- self.reader_block_size = 1024 * 1024
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- self.sparse = sparse
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-
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- def __dealloc__(self):
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- """Free the chunker's resources."""
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- if self.table != NULL:
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- free(self.table)
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- self.table = NULL
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- if self.data != NULL:
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- free(self.data)
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- self.data = NULL
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-
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- cdef int fill(self) except 0:
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- """Fill the chunker's buffer with more data."""
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- cdef ssize_t n
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- cdef object chunk
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-
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- # Move remaining data to the beginning of the buffer
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- memmove(self.data, self.data + self.last, self.position + self.remaining - self.last)
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- self.position -= self.last
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- self.last = 0
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- n = self.buf_size - self.position - self.remaining
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-
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- if self.eof or n == 0:
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- return 1
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-
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- # Use FileReader to read data
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- chunk = self.file_reader.read(n)
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- n = chunk.meta["size"]
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-
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- if n > 0:
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- # Only copy data if it's not a hole
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- if chunk.meta["allocation"] == CH_DATA:
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- # Copy data from chunk to our buffer
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- memcpy(self.data + self.position + self.remaining, <const unsigned char*>PyBytes_AsString(chunk.data), n)
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- else:
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- # For holes, fill with zeros
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- memcpy(self.data + self.position + self.remaining, <const unsigned char*>PyBytes_AsString(zeros[:n]), n)
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-
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- self.remaining += n
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- self.bytes_read += n
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- else:
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- self.eof = 1
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-
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- return 1
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-
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- cdef object process(self) except *:
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- """Process the chunker's buffer and return the next chunk."""
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- cdef uint32_t sum, chunk_mask = self.chunk_mask
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- cdef size_t n, old_last, min_size = self.min_size, window_size = self.window_size
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- cdef uint8_t* p
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- cdef uint8_t* stop_at
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- cdef size_t did_bytes
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-
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- if self.done:
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- if self.bytes_read == self.bytes_yielded:
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- raise StopIteration
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- else:
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- raise Exception("chunkifier byte count mismatch")
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-
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- while self.remaining < min_size + window_size + 1 and not self.eof: # see assert in Chunker init
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- if not self.fill():
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- return None
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-
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- # Here we either are at eof...
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- if self.eof:
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- self.done = 1
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- if self.remaining:
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- self.bytes_yielded += self.remaining
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- # Return a memory view of the remaining data
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- return memoryview((self.data + self.position)[:self.remaining])
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- else:
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- if self.bytes_read == self.bytes_yielded:
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- raise StopIteration
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- else:
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- raise Exception("chunkifier byte count mismatch")
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-
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- # ... or we have at least min_size + window_size + 1 bytes remaining.
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- # We do not want to "cut" a chunk smaller than min_size and the hash
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- # window starts at the potential cutting place.
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- self.position += min_size
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- self.remaining -= min_size
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- sum = _buzhash(self.data + self.position, window_size, self.table)
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-
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- while self.remaining > self.window_size and (sum & chunk_mask) and not (self.eof and self.remaining <= window_size):
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- p = self.data + self.position
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- stop_at = p + self.remaining - window_size
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-
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- while p < stop_at and (sum & chunk_mask):
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- sum = _buzhash_update(sum, p[0], p[window_size], window_size, self.table)
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- p += 1
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-
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- did_bytes = p - (self.data + self.position)
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- self.position += did_bytes
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- self.remaining -= did_bytes
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-
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- if self.remaining <= window_size:
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- if not self.fill():
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- return None
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-
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- if self.remaining <= window_size:
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- self.position += self.remaining
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- self.remaining = 0
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-
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- old_last = self.last
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- self.last = self.position
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- n = self.last - old_last
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- self.bytes_yielded += n
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-
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- # Return a memory view of the chunk
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- return memoryview((self.data + old_last)[:n])
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-
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- def chunkify(self, fd, fh=-1, fmap=None):
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- """
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- Cut a file into chunks.
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-
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- :param fd: Python file object
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- :param fh: OS-level file handle (if available),
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- defaults to -1 which means not to use OS-level fd.
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- :param fmap: a file map, same format as generated by sparsemap
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- """
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- self._fd = fd
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- self.fh = fh
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- self.file_reader = FileReader(fd=fd, fh=fh, read_size=self.reader_block_size, sparse=self.sparse, fmap=fmap)
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- self.done = 0
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- self.remaining = 0
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- self.bytes_read = 0
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- self.bytes_yielded = 0
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- self.position = 0
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- self.last = 0
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- self.eof = 0
|
|
|
- return self
|
|
|
-
|
|
|
- def __iter__(self):
|
|
|
- return self
|
|
|
-
|
|
|
- def __next__(self):
|
|
|
- started_chunking = time.monotonic()
|
|
|
- data = self.process()
|
|
|
- got = len(data)
|
|
|
- # we do not have SEEK_DATA/SEEK_HOLE support in chunker_process C code,
|
|
|
- # but we can just check if data was all-zero (and either came from a hole
|
|
|
- # or from stored zeros - we can not detect that here).
|
|
|
- if zeros.startswith(data):
|
|
|
- data = None
|
|
|
- allocation = CH_ALLOC
|
|
|
- else:
|
|
|
- allocation = CH_DATA
|
|
|
- self.chunking_time += time.monotonic() - started_chunking
|
|
|
- return Chunk(data, size=got, allocation=allocation)
|
|
|
-
|
|
|
-
|
|
|
-def buzhash(data, unsigned long seed):
|
|
|
- cdef uint32_t *table
|
|
|
- cdef uint32_t sum
|
|
|
- table = buzhash_init_table(seed & 0xffffffff)
|
|
|
- sum = _buzhash(<const unsigned char *> data, len(data), table)
|
|
|
- free(table)
|
|
|
- return sum
|
|
|
-
|
|
|
-
|
|
|
-def buzhash_update(uint32_t sum, unsigned char remove, unsigned char add, size_t len, unsigned long seed):
|
|
|
- cdef uint32_t *table
|
|
|
- table = buzhash_init_table(seed & 0xffffffff)
|
|
|
- sum = _buzhash_update(sum, remove, add, len, table)
|
|
|
- free(table)
|
|
|
- return sum
|